Data Releases: Tracks, Tables, and Assemblies
This page contains track and table release information for the following genome assemblies:
For older log entries, please see this page.
Last updated 22 Oct 2018. Inquiries and feedback welcome.
10 Latest Changes (all assemblies)
| Track Name |
Assembly |
| NCBI RefSeq Genomic Differences | hg38 |
| GENCODE Mouse VM18 release | mm10 |
| Initial oviAri4 release (using International Sheep Genome Consortium Oar_v4.0 (NCBI project 169880, GCF_000298735.2)
AUGUSTUS
Assembly
Chromosome Band (Ideogram)
CpG Islands
GC Percent
Gap
Genscan Genes
Human Chain and Net
INSDC
Interrupted Rpts
Microsatellite
Mouse Chain and Net
RefSeq Acc
RefSeq Alignments
RefSeq All
RefSeq Curated
RefSeq Other
RefSeq Predicted
RepeatMasker
Sheep Chain/Net
Simple Repeats
Unmasked CpG
WM + SDust | oviAri4 |
| Initial anoGam3 release (using The International Consortium for the Sequencing of Anopheles Genome AgamP3 (NCBI project 1438, GCF_000005575.2)
A. gambiae Chain/Net
AUGUSTUS
Assembly
Chromosome Band (Ideogram)
CpG Islands
D. melanogaster Chain and Net
GC Percent
Gap
Genscan Genes
INSDC
Interrupted Rpts
Microsatellite
RefSeq Acc
RepeatMasker
Simple Repeats
Unmasked CpG
WM + SDust | anoGam3 |
| Initial thaSir1 release (using The Genome Institute at Washington University School of Medicine (WUGSC) Thamnophis_sirtalis-6.0 (NCBI project 189551, GCF_001077635.1): AUGUSTUS,Assembly,Chromosome Band (Ideogram),CpG Islands,GC Percent,Gap,Garter snake Chain/Net,Genscan Genes,Human Chain and Net,INSDC,Interrupted Rpts,Microsatellite,Mouse Chain and Net,RefSeq Acc,RefSeq Alignments,RefSeq All,RefSeq Other,RefSeq Predicted,RepeatMasker,Simple Repeats,Unmasked CpG,WM + SDust | thaSir1 |
| Initial panTro6 release (using University of Washington Clint_PTRv2 (NCBI project 369439, GCF_002880755.1): AUGUSTUS, Assembly, Chimp Chain/Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain and Net, RefSeq Acc, RefSeq Alignments, RefSeq All, RefSeq Curated, RefSeq Other, RefSeq Predicted, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust | panTro6 |
| Ensembl v92 release | ailMel1 anoCar2 bosTau6 canFam3 cavPor3 ce11 chlSab2 choHof1 ci3 criGriChoV1 danRer11 dasNov3 dm6 echTel1 equCab2 eriEur1 felCat8 fr2 gadMor1 galGal5 gasAcu1 gorGor4 hetGla1 hetGla2 latCha1 loxAfr3 macFas5 melGal1 monDom5 musFur1 myoLuc2 nomLeu3 ochPri2 ornAna1 ornAna2 oryCun2 oryLat2 otoGar3 oviAri3 panPan2 panTro5 petMar2 ponAbe2 proCap1 pteVam1 rheMac8 rhiRox1 rn6 sacCer3 saiBol1 sarHar1 sorAra1 speTri2 susScr11 taeGut1 tarSyr2 tetNig2 tupBel1 vicPac1 xenTro3 |
| DECIPHER Variants | hg19 |
| Crispr Targets 10K | mm10 |
| GRCh37 patch release 13, alternate sequences and reference sequence patches | hg19Patch13 |
Human Dec. 2013 (GRCh38/hg38) (hg38, GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15))
Human Feb. 2009 (GRCh37/hg19) (hg19, GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1))
Mouse Dec. 2011 (GRCm38/mm10) (mm10, Genome Reference Consortium Mouse Build 38 (GCA_000001635.2))
A. gambiae Oct. 2006 (AgamP3/anoGam3) (anoGam3, The International Consortium for the Sequencing of Anopheles Genome)
African clawed frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) (xenLae2, International Xenopus Sequencing Consortium)
| Track Name |
| X. tropicalis (xenTro9) Chain and Net |
| Initial xenLae2 release (using International Xenopus Sequencing Consortium Xenopus_laevis_v2 (NCBI project 338693, GCF_001663975.1)), AUGUSTUS, African clawed frog Chain/Net, Assembly, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Gap Overlaps, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust, X. tropicalis Chain and Net |
Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) (vicPac2, Broad Institute)
| Track Name |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Alpaca Jul. 2008 (Broad/vicPac1) (vicPac1, Broad Institute vicPac1)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
American alligator Aug. 2012 (allMis0.2/allMis1) (allMis1, International Crocodilian Genomes Working Group)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Armadillo Dec. 2011 (Baylor/dasNov3) (dasNov3, Baylor College of Medicine Dasnov3.0 (GCA_000208655.2))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) (gadMor1, Genofisk GadMor_May2010 (GCA_000231765.1))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) (papAnu2, Baylor College of Medicine)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v90 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Bison Oct. 2014 (Bison_UMD1.0/bisBis1) (bisBis1, U. Maryland)
| Track Name |
| TransMap Alignments (AUGUSTUS, Assembly, Bison Chain/Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust) |
Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) (panPan2, Max-Planck Institute for Evolutionary Anthropology)
| Track Name |
| Ensembl v92 release |
| Initial panPan2 release (using Max-Planck Institute for Evolutionary Anthropology MPI-EVA panpan1.1 (NCBI project 169343, GCF_000258655.2): AUGUSTUS, Assembly, Bonobo Chain/Net, Chimp Chain/Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Gorilla Chain/Net, Human Chain/Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain/Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust. |
Bonobo May 2012 (Max-Planck/panPan1) (panPan1, Max-Planck Institute panpan1 (GCA_000258655.1))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) (melUnd1, WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Bushbaby Mar. 2011 (Broad/otoGar3) (otoGar3, Broad Institute (GCA_000181295.3))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
C. elegans Feb. 2013 (WBcel235/ce11) (ce11, C. elegans Sequencing Consortium WBcel235 (GCA_000002985.3))
| Track Name |
| Ensembl v92 release |
| CRISPR track for ce11 |
| NCBI RefSeq gene predictions |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| Uniprot proteins |
C. elegans Oct. 2010 (WS220/ce10) (ce10, Washington University School of Medicine GSC and Sanger Institute WS220)
| Track Name |
| Uniprot proteins |
C. intestinalis Apr. 2011 (Kyoto KH/ci3) (ci3, Kyoto KH)
| Track Name |
| Ensembl v92 release |
| Initial ci3 release (using Kyoto KH Kyoto KH (NCBI project 187185, GCF_000224145.1) Assembly, C. elegans Chain and Net, C. intestinalis Chain/Net, C. savignyi Cha, Chromosome Band (Ideogram), CpG Islands, Ensembl Genes, GC Percent, Gap, Genscan Genes, INSDC, Interrupted Rpts, Microsatellite, RefSeq Acc, RepeatMasker, S. purp, Simple Repeats, Unmasked CpG, WM + SDust. |
Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8, International Cat Genome Sequencing Consortium)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) (felCat5, International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v90 release |
Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5, ICGC Gallus_gallus-5.0 (GCA_000002315.3))
Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) (galGal4, ICGSC Gallus_gallus-4.0 (GCA_000002315.2))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
Chimp Jan. 2018 (Clint_PTRv2/panTro6) (panTro6, University of Washington)
| Track Name |
| Initial panTro6 release (using University of Washington Clint_PTRv2 (NCBI project 369439, GCF_002880755.1): AUGUSTUS, Assembly, Chimp Chain/Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain and Net, RefSeq Acc, RefSeq Alignments, RefSeq All, RefSeq Curated, RefSeq Other, RefSeq Predicted, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust |
Chimp May 2016 (Pan_tro 3.0/panTro5) (panTro5, Chimpanzee Sequencing and Analysis Consortium)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Chimp Feb. 2011 (CSAC 2.1.4/panTro4) (panTro4, CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v90 release |
Chinese hamster Aug. 2011 (CHO K1 cell line/criGriChoV1) (criGriChoV1, Beijing Genomics Institute)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| Initial criGriChoV1 release (using Beijing Genomics Institute CHO K1 cell line (NCBI project 69991, GCF_000223135.1))
AUGUSTUS, Assembly, Chinese hamster Chain and Net, Chinese hamster Chain/Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Gap Overlaps, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust |
Chinese hamster Jul. 2013 (C_griseus_v1.0/criGri1) (criGri1, Beijing Genomics Institution-Shenzhen)
Chinese pangolin Aug 2014 (M_pentadactyla-1.1.1/manPen1) (manPen1, Washington University (WashU) GCA_000738955.1)
| Track Name |
| Initial manPen1 release (Chinese Pangolin, Manis pentadactyla, NCBI Bioproject: 20331, Accession ID: GCA_000738955.1) Assembly, AUGUSTUS, Chain/Net, Chromosome Band (Ideogram), CpG Islands, GC Percent Gap, Genscan Genes, Human (hg38) Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse (mm10) Chain and Net, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust, supporting tables and files. |
Coelacanth Aug. 2011 (Broad/latCha1) (latCha1, Broad LatCha1 (GCA_000225785.1))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) (bosTau8, University of Maryland Bos_taurus_UMD_3.1.1)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6) (bosTau6, UMD_3.1 (NCBI project 10708, accession GCA_000003055.3))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Crab-eating macaque Jun. 2013 (Macaca_fascicularis_5.0/macFas5) (macFas5, Washington University (WashU) GCA_000364345.1)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) (dm6, The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics (GCA_000001215.4))
| Track Name |
| Ensembl v92 release |
| NCBI RefSeq gene predictions |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| Uniprot proteins |
D. persimilis Oct. 2005 (Broad/droPer1) (droPer1, Broad 28 Oct. 2005)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
Dog Sep. 2011 (Broad CanFam3.1/canFam3) (canFam3, Broad CanFam3.1 (GCA_000002285.2))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| X. tropicalis (xenTro9) Chain and Net |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) (turTru2, Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02))
| Track Name |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Elephant Jul. 2009 (Broad/loxAfr3) (loxAfr3, Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Elephant shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1, Institute of Molecular and Cell Biology, Singapore)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Ferret Apr. 2011 (MusPutFur1.0/musFur1) (musFur1, Ferret Genome Sequencing Consortium)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Fugu Oct. 2011 (FUGU5/fr3) (fr3, Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| X. tropicalis (xenTro9) Chain and Net |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Fugu Oct. 2004 (JGI 4.0/fr2) (fr2, JGI V4.0)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
GRCh37.p13 Jun. 2013 (hg19Patch13, GRCh37 patch 13 Genome Reference Consortium Human Reference 37)
Garter snake Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) (thaSir1, The Genome Institute at Washington University School of Medicine (WUGSC))
| Track Name |
| Initial thaSir1 release (using The Genome Institute at Washington University School of Medicine (WUGSC) Thamnophis_sirtalis-6.0 (NCBI project 189551, GCF_001077635.1): AUGUSTUS,Assembly,Chromosome Band (Ideogram),CpG Islands,GC Percent,Gap,Garter snake Chain/Net,Genscan Genes,Human Chain and Net,INSDC,Interrupted Rpts,Microsatellite,Mouse Chain and Net,RefSeq Acc,RefSeq Alignments,RefSeq All,RefSeq Other,RefSeq Predicted,RepeatMasker,Simple Repeats,Unmasked CpG,WM + SDust |
Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) (nomLeu3, Gibbon Genome Sequencing Consortium )
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1) (nomLeu1, GGSC (NCBI project 13975, accession GCA_000146795.1))
| Track Name |
| Ensembl v90 release |
Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) (aquChr2, WashU)
| Track Name |
| Initial aquChr2 release (using WashU aquChr-1.0.2 (NCBI project 256103, GCA_000766835.1): AUGUSTUS, Assembly, Chicken Chain and Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Golden eagle Chain/Net, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust, supporting tables and files. |
Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) (rhiRox1, Novogene)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| Initial rhiRox1 release (using Novogene Rrox_v1 (NCBI project 266995, GCA_000769185.1): Assembly, Gap, GC Percent, INSDC, Short Match, Restr Enzymes, AUGUSTUS, Genscan Genes, Other RefSeq, CpG Islands, Human Chain/Net, Tarsier Chain/Net, RepeatMasker, Microsatellite, Interrupted Rpts, WM + SDust, Simple Repeats. |
Gorilla Mar. 2016 (GSMRT3/gorGor5) (gorGor5, UNIVERSITY OF WASHINGTON)
| Track Name |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Gorilla Dec 2014 (gorGor4.1/gorGor4) (gorGor4, Wellcome Trust Sanger Institute Dec 2014 (NCBI project 31265, GCA_000151905.1))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3, Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1))
| Track Name |
| Ensembl v90 release |
Green monkey Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) (chlSab2, Vervet Genomics Consortium GCA_000409795.2)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Ensembl genes v86 for Green Monkey (chlSab2) |
Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3, Broad Institute cavPor3)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Hedgehog May 2012 (EriEur2.0/eriEur2) (eriEur2, Broad Institute EriEur2.0)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Hedgehog June 2006 (Broad/eriEur1) (eriEur1, Broad Institute eriEur1 (Draft_v1, NCBI project 12575))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Horse Sep. 2007 (Broad/equCab2) (equCab2, Broad Institute EquCab2)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| Human (hg38) and Horse (equCab2) Chain/Nets |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Kangaroo rat Jul. 2008 (Broad/dipOrd1) (dipOrd1, Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000))
| Track Name |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Lamprey Dec. 2017 (Pmar_germline 1.0/petMar3) (petMar3, University of Kentucky)
| Track Name |
| Initial petMar3 release (using University of Kentucky Pmar_germline 1.0 (NCBI project 357048, GCA_002833325.1): AUGUSTUS, Assembly, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Lamprey Chain/Net, Microsatellite, Mouse Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust. |
Lamprey Sep. 2010 (WUGSC 7.0/petMar2) (petMar2, GSC Washington University School of Medicine)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Lizard May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2, Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| X. tropicalis (xenTro9) Chain and Net |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Malayan flying lemur Jun. 2014 (G_variegatus-3.0.2/galVar1) (galVar1, Washington University (WashU))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Manatee Oct. 2011 (Broad v1.0/triMan1) (triMan1, Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Marmoset March 2009 (WUGSC 3.2/calJac3) (calJac3, WUSTL 3.2 (GCA_000004665.1))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) (oryLat2, NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) (geoFor1, Beijing Genomics Institute)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Megabat Jul. 2008 (Broad/pteVam1) (pteVam1, Broad Institute pteVam1 (NCBI project 20325, ABRP01000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) (myoLuc2, Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Minke whale Oct. 2013 (BalAcu1.0/balAcu1) (balAcu1, Korea Ocean Research & Development Institute)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
Mouse lemur May 2015 (Mouse lemur/micMur2) (micMur2, Broad Institute and Baylor College of Medicine Mmur_2.0)
| Track Name |
| UCSC to RefSeq Chromosome names |
| Ensembl v90 release |
| Ensembl v89 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) (hetGla2, Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Naked mole-rat Jul. 2011 (BGI HetGla_1.0/hetGla1) (hetGla1, HetGla_1.0 (NCBI project 68323, accession GCA_000230445.1)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) (oreNil2, Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.2))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Opossum Oct. 2006 (Broad/monDom5) (monDom5, Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| X. tropicalis (xenTro9) Chain and Net |
| Ensembl v89 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) (ponAbe2, WUSTL 3.0)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1, BGI-Shenzhen AilMel 1.0 Dec. 2009)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Pig Feb. 2017 (Sscrofa11.1/susScr11) (susScr11, The Swine Genome Sequencing Consortium (SGSC))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| Initial susScr11 release (using The Swine Genome Sequencing Consortium (SGSC) Sscrofa11.1 (NCBI project 13421, GCF_000003025.6)) AUGUSTUS, Assembly, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, Mouse Chain and Net, Pig Chain/Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust. |
Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) (susScr3, SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Pika May 2012 (OchPri3.0/ochPri3) (ochPri3, Broad Institute)
| Track Name |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Pika Jul. 2008 (Broad/ochPri2) (ochPri2, Broad Institute ochPri2)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2, WUGSC ASM227v2)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| Ensembl v89 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) (ornAna1, WUSTL version 5.0.1)
Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1, Proboscis Monkey Functional Genome Consortium)
| Track Name |
| Initial nasLar1 release (using Proboscis Monkey Functional Genome Consortium): Assembly, Augustus, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genbank-process tracks and supporting tables, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Microsatellite, RepeatMasker, Simple Repeats, Tarsier Chain and Net, Unmasked CpG, WM + SDust, supporting tables and files. |
Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2, Broad Institute oryCun2 (NCBI project 12819, AAGW00000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Rat Jul. 2014 (RGSC 6.0/rn6) (rn6, RGSC Rnor_6.0 (GCA_000001895.4))
Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8, Baylor College of Medicine Genome Sequencing Center)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Rock hyrax Jul. 2008 (Broad/proCap1) (proCap1, Broad Institute proCap1 (NCBI project 13972, ABRQ01000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
S. cerevisiae Apr. 2011 (SacCer_Apr2011/sacCer3) (sacCer3, Saccharomyces cerevisiae S288c assembly from Saccharomyces Genome Database (GCA_000146045.2))
| Track Name |
| Ensembl v92 release |
| NCBI RefSeq gene predictions |
| Ensembl v91 release |
Sheep Nov. 2015 (Oar_v4.0/oviAri4) (oviAri4, International Sheep Genome Consortium)
Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) (oviAri3, International Sheep Genome Consortium)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Shrew Aug. 2008 (Broad/sorAra2) (sorAra2, Broad Institute SorAra2.0)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Shrew June 2006 (Broad/sorAra1) (sorAra1, Broad Institute sorAra1 (Draft_v2))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Sloth Jul. 2008 (Broad/choHof1) (choHof1, Broad Institute choHof1)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Squirrel Nov. 2011 (Broad/speTri2) (speTri2, Broad Institute (GCA_000236235.1))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Squirrel monkey Oct. 2011 (Broad/saiBol1) (saiBol1, Broad SaiBol1.0 (GCA_000235385.1))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Stickleback Feb. 2006 (Broad/gasAcu1) (gasAcu1, Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) (tarSyr2, Washington University)
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Tarsier Aug. 2008 (Broad/tarSyr1) (tarSyr1, Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000))
| Track Name |
| Ensembl v90 release |
Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) (sarHar1, Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1))
| Track Name |
| Ensembl v92 release |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Tenrec Nov. 2012 (Broad/echTel2) (echTel2, Broad/EchTel2.0)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Tenrec July 2005 (Broad/echTel1) (echTel1, Broad July 2005)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) (tetNig2, Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Tibetan frog Mar. 2015 (BGI_ZX_2015/nanPar1) (nanPar1, ASM93562v1)
| Track Name |
| X. tropicalis (xenTro9) Chain and Net |
| Initial nanPar1 release (using ASM93562v1 BGI_ZX_2015 (NCBI project 243398, GCA_000935625.1): Assembly, AUGUSTUS, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, INSDC, Interrupted Rpts, Microsatellite, RefSeq Acc, RepeatMasker, Simple Repeats, Tibetan frog Chain/Net, Unmasked CpG, WM + SDust, X. tropicalis Chain and Net, supporting tables and files. |
Tree shrew Dec. 2006 (Broad/tupBel1) (tupBel1, Broad Institute tupBel1 (NCBI project 13971, AAPY01000000))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Turkey Nov. 2014 (Turkey_5.0/melGal5) (melGal5, Turkey Genome Consortium)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| Rat (rn6) Chain/Nets |
| nitial melGal5 release (using Turkey Genome Consortium): AUGUSTUS, Assembly, Chicken Chain and Net, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genbank-process tracks and supporting tables, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Medium ground finch Chain and Net, Microsatellite, Mouse Chain and Net, Opossum Chain and Net, Peregrine falcon Chain and Net, Rat Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Turkey Chain/Net, Unmasked CpG, WM + SDust, X. tropicalis Chain and Net, Zebra finch Chain and Net, Zebrafish Chain and Net, supporting tables and files. |
Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) (melGal1, TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) (macEug2, TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1))
| Track Name |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
White rhinoceros May 2012 (CerSimSim1.0/cerSim1) (cerSim1, Broad Institute)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
X. tropicalis Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) (xenTro9, DOE Joint Genome Institute)
| Track Name |
| NCBI RefSeq gene predictions |
| Initial xenTro9 release (using DOE Joint Genome Institute Xenopus_tropicalis_v9.1 (GCA_000004195.3)): African clawed frog Chain and Net, AUGUSTUS Genes, Assembly, CpG Islands, Chicken Chain and Net, Dog Chain and Net, X. tropicalis ESTs, Other ESTs, Fugu Chain and Net, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Repeats, Lizard Chain and Net, Microsatellite, Mouse Chain and Net, X. tropicalis mRNAs, Other mRNAs, Opossum Chain and Net, Other RefSeq Genes, RefSeq Genes, RepeatMasker, Simple Repeats, Tibetan frog Chain and Net, WindowMasker + SDust |
X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) (xenTro7, US DOE Joint Genome Institute (JGI-PGF))
| Track Name |
| NCBI RefSeq gene predictions |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) (xenTro3, US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1))
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) (taeGut2, Washington University School of Medicine)
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) (taeGut1, Washington University taeGut1)
| Track Name |
| Ensembl v92 release |
| Ensembl v91 release |
Zebrafish May 2017 (GRCz11/danRer11) (danRer11, Genome Reference Consortium Zebrafish Build 11 (GCA_000002035.4))
| Track Name |
| Ensembl v92 release |
| NCBI RefSeq gene predictions |
| Initial danRer11 release (using Genome Reference Consortium GRCz11 (NCBI project 11776, GCA_000002035.4)): AUGUSTUS Genes, Assembly, Zebgrafish ESTs, Other ESTs, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Repeats, Microsatellite, Mouse Chain and Net, Zebrafish mRNAs, Other mRNAs, Other RefSeq Genes, RefSeq Genes, RepeatMasker, Simple Repeats, CpG Islands, WindowMasker + SDust |
Zebrafish Sep. 2014 (GRCz10/danRer10) (danRer10, Genome Reference Consortium Zebrafish Build 10 (GCA_000002035.3))
| Track Name |
| NCBI RefSeq gene predictions |
| UCSC to RefSeq Chromosome names |
| Ensembl v91 release |
| Uniprot proteins |
| Ensembl v89 release |
| TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
| Rat (rn6) Chain/Nets |
Zebrafish Jul. 2010 (Zv9/danRer7) (danRer7, Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2))
| Track Name |
| Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
| UCSC to RefSeq Chromosome names |