Track Data Hubs
 

Track data hubs are collections of external tracks that can be imported into the UCSC Genome Browser. Hub tracks show up under the hub's own blue label bar on the main browser page, as well as on the configure page. For more information, including where to host your track hub, see the User's Guide.To import a public hub click its "Connect" button below.

NOTE: Because Track Hubs are created and maintained by external sources, UCSC is not responsible for their content.

Filter hubs by assembly:

Clicking Connect redirects to the gateway page of the selected hub's default assembly.
Display Hub Name Description Assemblies
UniProt Features ERROR: ftp server response timed out > 1000000 microsec Couldn't open ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_hub/hub.txt Debug Help hg38
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debug Help hg38, hg19, mm10
Peterhof_yeasts ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host public.dobzhanskycenter.ru port 80. Couldn't open http://public.dobzhanskycenter.ru/PeterhofYeastHub/hub.txt Debug Help [+] sacCer3, 1B_D1606_spades...
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Hippocampal DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Cognition/hub.txt Debug Help susScr3
Porcine DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/TJ_Tabasco/hub.txt Debug Help susScr3
C_elegans_isolates ERROR: TCP non-blocking connect() to waterston.gs.washington.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt Debug Help [+] CB4856Princeton_JR-contig...
Umap and Bismap mappability Uniquely mappable regions of genome and methylome hg38, hg19, mm9, mm10
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8
ChromosomeAssembliesGR ERROR: Couldn't open http://sftp.rvc.ac.uk/rvcpaper/birdsHUB/hub.txt Debug Help colLiv2, galGal4, falPer2
EPD Viewer Hub ERROR: Couldn't open http://epd.vital-it.ch/ucsc/epdHubCustomSpecies/epdHubCustomSpecies.txt Debug Help amel5, araTha1, zm3, spo2
Cancer genome polyA site & usage ERROR: getaddrinfo() error on hostName=johnlab.org: Name or service not known Couldn't open http://johnlab.org/xpad/Hub/UCSC.txt Debug Help hg19
DASHR small ncRNA DASHR Human non-coding RNA annotation hg19
Human Islet lncRNAs ERROR: Couldn't open http://www.imperial.ac.uk/medicine/beta-cell-genome-regulation-laboratory/data/HILNCs/HILNCs.txt Debug Help hg19
Broad Improved Canine Annotation v1 ERROR: netHttpConnect: url (ftp://anonymous:x%40genome.ucsc.edu@ftp.broadinstitute.orgpub/vgb/dog/trackHub/hub.txt) is not for http. Debug Help canFam3
Ultraconserved Elements Ultra conserved Elements in the Human Genome Science 304(5675) pp.1321-1325 (2004) hg19
Porcine DNA methylation ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Chankyu/hub.txt Debug Help susScr3
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data [+] hg38, hg19, hg18, mm9, mm10, panTro2, danRer7, canFam3...
Promoterome CAGE and nucleosome positioning Zebrafish promoterome based on Haberle et al. and Nepal et al. danRer7
FaceBase Hub ERROR: Couldn't open http://trackhub.facebase.org/hub.txt Debug Help mm9, hg18, hg19, mm10
ChIP-seq data track HUBs from MSC cells from GSE79815 ERROR: Couldn't open https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt Debug Help mm9
WormBase ERROR: Couldn't open http://hubs.yllb.de/pub/databases/wormbase/releases/current-production-release/MULTI_SPECIES/hub/hub.txt Debug Help [+] brenneri, japonica, remanei, ovolvulus, briggsae...
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
lncRNA in Breast Cancer ERROR: TCP non-blocking connect() to pecan.swmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt Debug Help hg19
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD hg19
Plants ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/Plants/hub.txt Debug Help araTha1, braRap1, ricCom1
CEMT (CEEHRC) Epigenomic Data tracks from BCGSC, Vancouver hg19
Blueprint Hub Blueprint Epigenomics Data Hub hg38
GTEx Analysis Hub Allele-Specific Expression in 53 tissues from GTEx Analysis (NY Genome Center) hg19, hg38
FANTOM5 CAGE RECLU DATA ERROR: Couldn't open http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/hub.txt Debug Help hg19, hg18
CESAR Gene Mappings Human Exons mapped by CESAR [+] bosTau7, ailMel1, allMis1, anoCar2, calJac3...
Translation Initiation Sites (TIS) Translation Initiation Sites (TIS) track hg19
GeneHancer enhancers ERROR: Couldn't open https://genecards.weizmann.ac.il/geneloc/gh_hub/hub.txt Debug Help hg38
rfam12_ncRNA Rfam 12.0 non-coding RNA annotation hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
ENCODE Analysis Hub ERROR: Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
Peptide evidences CNIO Peptides detected from a re-analysis of multiple experiments and databases hg38, hg19
McGill EMC (CEEHRC) ERROR: Couldn't open http://epigenomesportal.ca/hub/hub.txt Debug Help hg19
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19, hg38, mm10, galGal4, dm6
GRC Genome Issues under Review Genome Reference Consortium: Genome issues and other features hg38, hg19, mm10, mm9, danRer7, danRer10
miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts hg19
mm9.SMC1.ChIAPET Cohesin(Smc1)-associated chromatin interactions in murine embryonic stem cells mm9
GTEx RNA-seq Signal Hub RNA-seq read coverage in 53 tissues from GTEx V6 (7572 samples) hg19, hg38
454 K562andHelaS3RNAseq ERROR: Couldn't open http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt Debug Help hg19
EcoliCompHub ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
EcoliCompHubWtDups ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
Croc and Bird Hub ERROR: Couldn't open http://genome-test.soe.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
Vista Enhancers ERROR: Couldn't open http://portal.nersc.gov/dna/RD/ChIP-Seq/VISTA_enhancer_e/VistaEnhancerTrackHub/hub.txt Debug Help hg19, mm9, mm10
ZebrafishGenomics ERROR: TCP non-blocking connect() to research.nhgri.nih.gov timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt Debug Help danRer7, danRer10
CPTAC Hub v1 ERROR: getaddrinfo() error on hostName=openslice.fenyolab.org: Name or service not known Couldn't open http://openslice.fenyolab.org/tracks/CPTAC/cptac/v1/hub.txt Debug Help hg19
UMassMed ZHub ERROR: Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
UniProt Features ERROR: ftp server response timed out > 1000000 microsec Couldn't open ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_hub/hub.txt Debug Help hg38
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debug Help hg38, hg19, mm10
Peterhof_yeasts ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host public.dobzhanskycenter.ru port 80. Couldn't open http://public.dobzhanskycenter.ru/PeterhofYeastHub/hub.txt Debug Help [+] sacCer3, 1B_D1606_spades...
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Hippocampal DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Cognition/hub.txt Debug Help susScr3
Porcine DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/TJ_Tabasco/hub.txt Debug Help susScr3
C_elegans_isolates ERROR: TCP non-blocking connect() to waterston.gs.washington.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt Debug Help [+] CB4856Princeton_JR-contig...
Umap and Bismap mappability Uniquely mappable regions of genome and methylome hg38, hg19, mm9, mm10
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8
ChromosomeAssembliesGR ERROR: Couldn't open http://sftp.rvc.ac.uk/rvcpaper/birdsHUB/hub.txt Debug Help colLiv2, galGal4, falPer2
EPD Viewer Hub ERROR: Couldn't open http://epd.vital-it.ch/ucsc/epdHubCustomSpecies/epdHubCustomSpecies.txt Debug Help amel5, araTha1, zm3, spo2
Cancer genome polyA site & usage ERROR: getaddrinfo() error on hostName=johnlab.org: Name or service not known Couldn't open http://johnlab.org/xpad/Hub/UCSC.txt Debug Help hg19
DASHR small ncRNA DASHR Human non-coding RNA annotation hg19
Human Islet lncRNAs ERROR: Couldn't open http://www.imperial.ac.uk/medicine/beta-cell-genome-regulation-laboratory/data/HILNCs/HILNCs.txt Debug Help hg19
Broad Improved Canine Annotation v1 ERROR: netHttpConnect: url (ftp://anonymous:x%40genome.ucsc.edu@ftp.broadinstitute.orgpub/vgb/dog/trackHub/hub.txt) is not for http. Debug Help canFam3
Ultraconserved Elements Ultra conserved Elements in the Human Genome Science 304(5675) pp.1321-1325 (2004) hg19
Porcine DNA methylation ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Chankyu/hub.txt Debug Help susScr3
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data [+] hg38, hg19, hg18, mm9, mm10, panTro2, danRer7, canFam3...
Promoterome CAGE and nucleosome positioning Zebrafish promoterome based on Haberle et al. and Nepal et al. danRer7
FaceBase Hub ERROR: Couldn't open http://trackhub.facebase.org/hub.txt Debug Help mm9, hg18, hg19, mm10
ChIP-seq data track HUBs from MSC cells from GSE79815 ERROR: Couldn't open https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt Debug Help mm9
WormBase ERROR: Couldn't open http://hubs.yllb.de/pub/databases/wormbase/releases/current-production-release/MULTI_SPECIES/hub/hub.txt Debug Help [+] brenneri, japonica, remanei, ovolvulus, briggsae...
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
lncRNA in Breast Cancer ERROR: TCP non-blocking connect() to pecan.swmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt Debug Help hg19
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD hg19
Plants ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/Plants/hub.txt Debug Help araTha1, braRap1, ricCom1
CEMT (CEEHRC) Epigenomic Data tracks from BCGSC, Vancouver hg19
Blueprint Hub Blueprint Epigenomics Data Hub hg38
GTEx Analysis Hub Allele-Specific Expression in 53 tissues from GTEx Analysis (NY Genome Center) hg19, hg38
FANTOM5 CAGE RECLU DATA ERROR: Couldn't open http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/hub.txt Debug Help hg19, hg18
CESAR Gene Mappings Human Exons mapped by CESAR [+] bosTau7, ailMel1, allMis1, anoCar2, calJac3...
Translation Initiation Sites (TIS) Translation Initiation Sites (TIS) track hg19
GeneHancer enhancers ERROR: Couldn't open https://genecards.weizmann.ac.il/geneloc/gh_hub/hub.txt Debug Help hg38
rfam12_ncRNA Rfam 12.0 non-coding RNA annotation hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
ENCODE Analysis Hub ERROR: Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
Peptide evidences CNIO Peptides detected from a re-analysis of multiple experiments and databases hg38, hg19
McGill EMC (CEEHRC) ERROR: Couldn't open http://epigenomesportal.ca/hub/hub.txt Debug Help hg19
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19, hg38, mm10, galGal4, dm6
GRC Genome Issues under Review Genome Reference Consortium: Genome issues and other features hg38, hg19, mm10, mm9, danRer7, danRer10
miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts hg19
mm9.SMC1.ChIAPET Cohesin(Smc1)-associated chromatin interactions in murine embryonic stem cells mm9
GTEx RNA-seq Signal Hub RNA-seq read coverage in 53 tissues from GTEx V6 (7572 samples) hg19, hg38
454 K562andHelaS3RNAseq ERROR: Couldn't open http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt Debug Help hg19
EcoliCompHub ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
EcoliCompHubWtDups ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
Croc and Bird Hub ERROR: Couldn't open http://genome-test.soe.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
Vista Enhancers ERROR: Couldn't open http://portal.nersc.gov/dna/RD/ChIP-Seq/VISTA_enhancer_e/VistaEnhancerTrackHub/hub.txt Debug Help hg19, mm9, mm10
ZebrafishGenomics ERROR: TCP non-blocking connect() to research.nhgri.nih.gov timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt Debug Help danRer7, danRer10
CPTAC Hub v1 ERROR: getaddrinfo() error on hostName=openslice.fenyolab.org: Name or service not known Couldn't open http://openslice.fenyolab.org/tracks/CPTAC/cptac/v1/hub.txt Debug Help hg19
UMassMed ZHub ERROR: Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
No Unlisted Track Hubs
Contact us to add a public hub.