track name="myBed4" description="BED 4 track" visibility=pack # BED4 format:: # chrom chromStart chromEnd name chr6 31690900 31692800 item0 chr6 31691011 31691110 item1 chr6 31691276 31691338 item2 chr6 31691425 31691492 item3 chr6 31691859 31691901 item4 chr6 31692099 31692262 item5 chr6 31692571 31692777 item6 track name="myBed12data" description="BED12 basic data" itemRgb=on visibility=pack # BED12 format:: # chrom chromStart chromEnd name score strand thickStart thickEnd itemRgb blockCount blockSizes blockStarts chr6 31691011 31692777 bed12example 0 + 31691060 31692674 255,80,80 6 99,62,67,42,163,206 0,265,414,848,1088,1560 track name="paired ends" description="BED12 showing paired ends" visibility=pack itemRgb=on #chrom chromStart chromEnd name score strand thickStart thickEnd itemRgb blockCount blockSizes chromStarts chr6 31690940 31691448 item0 999 - 0 0 200,0,0 2 31,33, 0,475, chr6 31690941 31691453 item1 500 + 0 0 0,0,0 2 36,35, 0,477, chr6 31691150 31691652 item2 500 + 0 0 0,0,0 2 35,32, 0,470, chr6 31691350 31691871 item3 500 + 0 0 0,0,0 2 33,34, 0,487, chr6 31691560 31692081 item4 500 - 0 0 200,0,0 2 33,34, 0,487, chr6 31691770 31692291 item5 500 - 0 0 200,0,0 2 33,34, 0,487, chr6 31691980 31692471 item6 500 - 0 0 200,0,0 2 33,34, 0,457, chr6 31692080 31692571 item7 500 + 0 0 0,0,0 2 33,34, 0,457, track type=bedGraph name="bedGraph" description="bedGraph data" color=150,200,100 autoScale=off maxHeightPixels=70:70:11 viewLimits=0:100 visibility=full # bedGraph format: # chrom chromStart chromEnd dataValue chr6 31691011 31691110 50 chr6 31691276 31691338 100 chr6 31691425 31691492 75 chr6 31691859 31691901 80 chr6 31692099 31692262 20 chr6 31692571 31692777 70 track type=wiggle_0 name="myWiggle" description="wiggle data" maxHeightPixels=70:70:11 color=100,100,255 visibility=full variableStep span=10 chrom=chr6 # wiggle format: # coord value 31691011 33 31691021 38 31691031 35 31691041 24 31691051 40 31691061 66 track type=pgSnp db=hg19 name="pgSnp" description="My SNPs -- Personal Genome SNP format" visibility=pack # pgSNP format: # chrom chromStart chromEnd name alleleCount alleleFreq alleleScores chr6 31691111 31691112 G/A 2 30,60 90,70 chr6 31691167 31691168 T/C 2 20,70 90,70 chr6 31691181 31691182 T/G 2 20,70 90,70 chr6 31691277 31691278 T/G/A 3 9,60,7 80,80,30 chr6 31691420 31691420 -/CGG 2 20,80 0,0 chr6 31691691 31691691 -/AAAT 2 30,30 0,0 chr6 31691701 31691707 CCGTAC/- 2 30,70 0,0 chr6 31691763 31691764 T 1 15 90 chr6 31692097 31692098 A 1 36 80 chr6 31692374 31692375 C/G 2 15,5 0,0 chr6 31692677 31692678 C 1 0 0